PlotDoseResponse {synergyfinder}R Documentation

Visualize the drug combination dose-response data

Description

A function to visualize the drug combination dose-response data

Usage

PlotDoseResponse(data, adjusted = TRUE, save.file = FALSE,
  pair.index = NULL, ...)

Arguments

data

a list object generated by function ReshapeData.

adjusted

a logical value. If it is FALSE, original response matrix will be plotted. If it is TRUE, adjusted response matrix will be plotted.

save.file

a parameter to specify if the visualization results are saved as pdf files in current working directory or not. If it is FALSE, the results are returned as a list of the plots. It is FALSE by default.

pair.index

a parameter to specify which drug combination if there are many drug combinations in the data. By default, it is NULL so that the visualization of all the drug combinations in the data is returned.

...

further graphical parameters from plot for plotting the single drug dose-response curve. Use e.g., cex.lab to change the axis label size and cex.axis to change the tick size of axises.

Value

if save.file parameter is TRUE, pdf files are returned. Otherwise, the plots are only displayed.

Author(s)

Examples

data("mathews_screening_data")
data <- ReshapeData(mathews_screening_data)
PlotDoseResponse(data)

[Package synergyfinder version 1.10.2 Index]