download {slinky} | R Documentation |
Convenience function to retrieve LINCS L1000 data and metadata files.
download(x, type = c("expression", "info", "readme"), level = 3, phase = 1, prompt = FALSE, verbose = FALSE) ## S4 method for signature 'Slinky' download(x, type = c("expression", "info", "readme"), level = 3, phase = 1, prompt = FALSE, verbose = FALSE)
x |
A Slinky object |
type |
Type of file to retrieve: expression, info (instance level), or readme file. |
level |
Level of data desired (if type is expression): 2, 3 (default), 4, or 5. |
phase |
What phase of data is desired, 1 of 2? Currently only 1 is supported. Phase 2 files may be used with this package, but must be downloaded manually. Phase 2 support planned for next update. |
prompt |
Warn before downloading huge files? Default is FALSE. |
verbose |
Do you want to know how things are going? Default is FALSE. |
None
Most of these files are very large and may take many minutes to several hours to download. A fast and reliable connection is highly recommended.
# for build/demo only. You MUST use your own key when using the slinky # package. sl <- new("Slinky") ## Not run: download(sl, type = "info") ## End(Not run)