chromHMM_demo_data {seqsetvis} | R Documentation |
Vignette data for seqsetvis was downloaded directly from GEO series GSE57498. This data is the state segmentation by chromHMM in the MCF7 cell line. chromHMM creates a hidden markov model by integrating several ChIP-seq samples, in this case:
MCF7_H3K27ac_ChIP-Seq
MCF7_H3K27me3_ChIP-Seq
MCF7_H3K4me1_ChIP-Seq
MCF7_H3K4me3_ChIP-Seq
MCF7_RNApolIIp_ChIP-Seq
Data from GEO series GSE57498 is from the publication Taberlay PC et al. 2014
Contains: