filter_variants {seqCAT} | R Documentation |
Filter variants on sequencing depth.
filter_variants(data, min_depth = 10)
data |
The dataframe containing the variant data to be filtered. |
min_depth |
Threshold for variant depth (integer; default 10). |
This is a function for filtering variants on sequencing depth. Variants with a depth lower than 10 are removed by default, but can be changed in the function call.
A data frame containing the filtered variants.
# Load test comparisons data(test_comparison) # Filter variants filt_1 <- filter_variants(test_comparison) filt_2 <- filter_variants(test_comparison, min_depth = 20)