downloadPathwayArchive {rWikiPathways} | R Documentation |
Access the monthly archives of pathway content from WikiPathways.
downloadPathwayArchive(date = "current", organism = NULL, format = c("gpml", "gmt", "svg"), destpath = "./")
date |
(optional) The timestamp for a monthly release (e.g., 20171010) or "current" (default) for latest release. |
organism |
(optional) A particular species. See listOrganisms. |
format |
(optional) Either gpml (default), gmt or svg. |
destpath |
(optional) Destination path for file to be downloaded to. Default is current workding directory. |
If you do not specify an organism, then an archive file will not be downloaded. Rather, the archive will be opened in a tab in your default browser.
Filename of downloaded file or an opened tab in default browser
downloadPathwayArchive() ## open in browser downloadPathwayArchive(format="gmt") ## open in browser downloadPathwayArchive(date="20171010", format="svg") ## open in browser downloadPathwayArchive(date="20171010", organism="Mus musculus", format="svg") ## download file downloadPathwayArchive(organism="Mus musculus") ## download file