plot_per_base_quality {qckitfastq} | R Documentation |
Generate a boxplot of the per position quality score.
plot_per_base_quality(per_base_quality, output_file = NA)
per_base_quality |
a data frame of the mean, median and quantiles of sequence quality per base. Most likely generated with the 'per_base_quality' function. |
output_file |
File to save plot to. Will not write to file if NA. Default NA. |
A boxplot of per position quality score distribution.
pbq <- per_base_quality(system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")) plot_per_base_quality(pbq)