parseVastToolsEvent {psichomics} | R Documentation |
Parses an alternative splicing event from VAST-TOOLS
parseVastToolsEvent(event)
event |
Data.frame: VAST-TOOLS event containing gene symbol, event ID, length, junctions coordinates, event type and inclusion levels for both samples |
Junctions are parsed from
List with the event attributes (chromosome, strand, event type and the position of the exon boundaries)
Only supports to parse one event at a time.
event <- read.table(text = "NFYA HsaEX0042823 chr6:41046768-41046903 136 chr6:41040823,41046768-41046903,41051785 C2 0 N 0 N" ) psichomics:::parseVastToolsEvent(event)