setASevent {psichomics} | R Documentation |
Get or set globally accessible elements
setASevent(event) getEvent() setEvent(event) getCategories() getCategory() setCategory(category) getCategoryData() getActiveDataset() setActiveDataset(dataset) getClinicalData(attrs = NULL) getPatientId() getPatientAttributes() getSampleInfo() setSampleInfo(value, category = getCategory()) getSampleId() getSampleAttributes() getJunctionQuantification(category = getCategory()) getGeneExpression(category = getCategory()) setNormalisedGeneExpression(geneExpr, category = getCategory()) getInclusionLevels() setInclusionLevels(incLevels, category = getCategory()) getPCA(category = getCategory()) setPCA(pca, category = getCategory()) getICA(category = getCategory()) setICA(ica, category = getCategory()) getCorrelation(category = getCategory()) setCorrelation(correlation, category = getCategory()) getGroupIndependenceTesting(category = getCategory()) setGroupIndependenceTesting(groupIndependenceTesting, category = getCategory()) getSpecies(category = getCategory()) setSpecies(species, category = getCategory()) getAssemblyVersion(category = getCategory()) setAssemblyVersion(assembly, category = getCategory()) getAnnotationName(category = getCategory()) setAnnotationName(annotName, category = getCategory()) getURLtoDownload() setURLtoDownload(url)
event |
Character: alternative splicing event |
category |
Character: data category (e.g. "Carcinoma 2016"); by default, it uses the selected data category |
dataset |
Character: dataset name |
attrs |
Character: name of attributes to retrieve (if NULL, the whole dataset is returned) |
value |
Value to attribute to an element |
geneExpr |
Data frame or matrix: normalised gene expression |
incLevels |
Data frame or matrix: inclusion levels |
pca |
|
ica |
Object containing independent component analysis |
correlation |
|
groupIndependenceTesting |
Object containing group independence testing results |
species |
Character: species |
assembly |
Character: assembly version |
annotName |
Character: annotation name |
url |
Character: URL links to download |
Getters return globally accessible data, whereas setters return NULL as they are only used to modify the Shiny session's state
getEvent
, getClinicalMatchFrom
,
getGroups
and getDifferentialSplicing