plotDistribution {psichomics}R Documentation

Plot distribution through a density plot

Description

The tooltip shows the median, variance, max, min and number of non-NA samples of each data series.

Usage

plotDistribution(data, groups = "All samples", rug = TRUE,
  vLine = TRUE, ..., title = NULL, psi = NULL)

plotDensity(data, groups = "All samples", rug = TRUE, vLine = TRUE,
  ..., title = NULL, psi = NULL)

Arguments

data

Numeric, data frame or matrix: data for one gene or alternative splicing event

groups

List of characters (list of groups containing data identifiers) or character vector (group of each value in data)

rug

Boolean: include rug plot to better visualise data distribution

vLine

Boolean: include vertical plot lines to display descriptive statistics for each group

...

Extra parameters passed to density to create the kernel density estimates

title

Character: plot title

psi

Boolean: are data composed of PSI values? Automatically set to TRUE if all data values are between 0 and 1

Value

Highcharter object with density plot

Examples

data <- sample(20, rep=TRUE)/20
groups <- c(rep("A", 10), rep("B", 10))
plotDistribution(data, groups)

[Package psichomics version 1.9.1 Index]