testSingleIndependence {psichomics}R Documentation

Multiple independence tests between a reference group and list of groups

Description

Uses Fisher's exact test.

Usage

testSingleIndependence(ref, groups, elements, pvalueAdjust = "BH")

Arguments

ref

Character: identifier of elements in reference group

groups

List of characters: list of groups where each element contains the identifiers of respective elements

elements

Character: all patient identifiers

pvalueAdjust

Character: method used to adjust p-values (see Details)

Details

The following methods for p-value adjustment are supported by using the respective string in the pvalueAdjust argument:

Value

Returns a groupIndependenceTest object: a list where each element is a list containing:

attribute

Name of the original groups compared against the reference groups

table

Contigency table used for testing

pvalue

Fisher's exact test's p-value


[Package psichomics version 1.10.1 Index]