calculateInclusionLevels {psichomics} | R Documentation |
Calculate inclusion levels using alternative splicing event annotation and junction quantification for many samples
calculateInclusionLevels(eventType, junctionQuant, annotation, minReads = 10)
eventType |
Character: type of the alternative event to calculate |
junctionQuant |
Matrix: junction quantification with samples as columns and junctions as rows |
annotation |
Data.frame: alternative splicing annotation related to event type |
minReads |
Integer: minimum of total reads required to consider the quantification as valid (10 by default) |
Matrix with inclusion levels