getSplicingEventFromGenes {psichomics} | R Documentation |
Get alternative splicing events from genes or vice-versa
getSplicingEventFromGenes(genes, ASevents) getGenesFromSplicingEvents(ASevents)
genes |
Character: gene symbols (or TCGA-styled gene symbols) |
ASevents |
Character: alternative splicing events |
A list of alternative splicing events is required to run
getSplicingEventFromGenes
Named character containing alternative splicing events or genes and their respective genes or alternative splicing events as names (depending on the function in use)
ASevents <- c("SE_1_+_201763003_201763300_201763374_201763594_NAV1", "SE_1_+_183515472_183516238_183516387_183518343_SMG7", "SE_1_+_183441784_183471388_183471526_183481972_SMG7", "SE_1_+_181019422_181022709_181022813_181024361_MR1", "SE_1_+_181695298_181700311_181700367_181701520_CACNA1E") genes <- c("NAV1", "SMG7", "MR1", "HELLO") # Get splicing events from genes matchedASevents <- getSplicingEventFromGenes(genes, ASevents) # Names of matched events are the matching input genes names(matchedASevents) matchedASevents # Get genes from splicing events matchedGenes <- getGenesFromSplicingEvents (ASevents) # Names of matched genes are the matching input alternative splicing events names(matchedGenes) matchedGenes