geneprofiler {pcaExplorer}R Documentation

Extract and plot the expression profile of genes

Description

Extract and plot the expression profile of genes

Usage

geneprofiler(se, genelist = NULL, intgroup = "condition",
  plotZ = FALSE)

Arguments

se

A DESeqDataSet object, or a DESeqTransform object.

genelist

An array of characters, including the names of the genes of interest of which the profile is to be plotted

intgroup

A factor, needs to be in the colnames of colData(se)

plotZ

Logical, whether to plot the scaled expression values. Defaults to FALSE

Value

A plot of the expression profile for the genes

Examples

dds <- makeExampleDESeqDataSet_multifac(betaSD_condition = 3,betaSD_tissue = 1)
rlt <- DESeq2::rlogTransformation(dds)
geneprofiler(rlt,paste0("gene",sample(1:1000,20)))
geneprofiler(rlt,paste0("gene",sample(1:1000,20)),plotZ=TRUE)

[Package pcaExplorer version 2.10.0 Index]