get_annotation_orgdb {pcaExplorer} | R Documentation |
Get an annotation data frame from org db packages
get_annotation_orgdb(dds, orgdb_species, idtype)
dds |
A |
orgdb_species |
Character string, named as the |
idtype |
Character, the ID type of the genes as in the row names of
|
A data frame for ready use in pcaExplorer
, retrieved from the
org db packages
library(airway) data(airway) airway dds_airway <- DESeq2::DESeqDataSetFromMatrix(assay(airway), colData = colData(airway), design=~dex+cell) ## Not run: get_annotation_orgdb(dds_airway,"org.Hs.eg.db","ENSEMBL") ## End(Not run)