moa.sup-class {mogsa} | R Documentation |
"moa.sup"
moa.sup class desc.
Objects can be created by calls of the form new("moa.sup", ...)
.
sup
:Object of class "list"
, the matrix of supplementary data.
coord.sep
:The projection of geneset infromation on each separate data.
coord.comb
:The projection of geneset infromation on total dataset.
score
:the gene set-sample pathway score
score.data
:the gene set-sample pathway score, data separate
score.pc
:the gene set-sample pathway score, PC separate
score.sep
:the gene set-sample pathway score, separate.
p.val
:the p value matrix have the same dimension with score matrix.
p.val.corrected
:the matrix of corrected p values.
There is no generic function for objects of "moa.sup", but have specific function, including: - decompose.gs.ind - box.gs.feature - plotGS - decompose.gs.group
Chen Meng
objects to See Also as decompose.gs.ind
, box.gs.feature
, plotGS
, decompose.gs.group
.
showClass("moa.sup") data(NCI60_4array_supdata) data(NCI60_4arrays) sapply(NCI60_4array_supdata, dim) ana <- moa(NCI60_4arrays, proc.row = "center_ssq1", w.data = "inertia", statis = TRUE) plot(ana, value="eig") smoa <- sup.moa(ana, sup=NCI60_4array_supdata, nf=5)