querymiRTargetbinding {miRspongeR} | R Documentation |
Query miRNA-target interactions by combining expression data and putative miRNA-target interactions.
querymiRTargetbinding(ExpData, miRTarget)
ExpData |
An input gene expression data frame, the rows are samples and the columns are genes. |
miRTarget |
An input miRNA-target interaction data frame, the first column is miRNA with name "mir" and the second column is target with name "gene". |
A list of queried miRNA-target interactions
Junpeng Zhang (https://www.researchgate.net/profile/Junpeng_Zhang3)
# Obtain expression data file "ExpData.csv" in csv format ExpDatacsv <- system.file("extdata","ExpData.csv",package="miRspongeR") ExpData <- read.csv(ExpDatacsv, header=FALSE, sep=",") # Obtain miRNA-target interaction data file "miR2Target.csv" in csv format miR2Target <- system.file("extdata", "miR2Target.csv", package="miRspongeR") miRTarget <- read.csv(miR2Target, header=TRUE, sep=",") miR2Target_queried <- querymiRTargetbinding(ExpData, miRTarget)