module_Validate {miRSM} | R Documentation |
Validation of miRNA sponge interactions in each miRNA sponge module
module_Validate(Modulelist, Groundtruth)
Modulelist |
List object: a list of the identified miRNA sponge modules. |
Groundtruth |
Matrix object: a list of experimentally validated miRNA sponge interactions. |
List object: a list of validated miRNA sponge interactions in each miRNA sponge module
Junpeng Zhang (https://www.researchgate.net/profile/Junpeng_Zhang3)
data(BRCASampleData) modulegenes_WGCNA <- module_WGCNA(ceRExp, mRExp) # Identify miRNA sponge modules using canonical correlation (CC) miRSM_WGCNA_CC <- miRSM(miRExp, ceRExp, mRExp, miRTarget, modulegenes_WGCNA, nperms = 10, method = 'CC') miRSM_WGCNA_CC_genes <- miRSM_WGCNA_CC[[2]] library(miRspongeR) Groundtruthcsv <- system.file("extdata", "Groundtruth.csv", package="miRspongeR") Groundtruth <- read.csv(Groundtruthcsv, header=TRUE, sep=",") miRSM.Validate <- module_Validate(miRSM_WGCNA_CC_genes, Groundtruth)