module_miRtarget {miRSM} | R Documentation |
Extract miRNA-target interactions of each miRNA sponge module
module_miRtarget(share_miRs, Modulelist)
share_miRs |
List object: a list of common miRNAs of each miRNA sponge module generated by share_miRs function. |
Modulelist |
List object: a list of the identified miRNA sponge modules. |
List object: miRNA-target interactions of each miRNA sponge module.
Junpeng Zhang (https://www.researchgate.net/profile/Junpeng_Zhang3)
data(BRCASampleData) modulegenes_WGCNA <- module_WGCNA(ceRExp, mRExp) # Identify miRNA sponge modules using canonical correlation (CC) miRSM_WGCNA_CC <- miRSM(miRExp, ceRExp, mRExp, miRTarget, modulegenes_WGCNA, nperms = 10, method = 'CC') miRSM_WGCNA_CC_genes <- miRSM_WGCNA_CC[[2]] miRSM_WGCNA_share_miRs <- share_miRs(miRExp, ceRExp, mRExp, miRTarget, miRSM_WGCNA_CC_genes) miRSM_WGCNA_miRtarget <- module_miRtarget(miRSM_WGCNA_share_miRs, miRSM_WGCNA_CC_genes)