calcShrinkParameters {metagenomeSeq}R Documentation

Calculate shrinkage parameters

Description

Calculate the shrunken variances and variance of parameters of interest across features.

Usage

calcShrinkParameters(fit, coef, mins2, exclude = NULL)

Arguments

fit

A matrix of fits as outputted by calcZeroComponent or calcPosComponent

coef

Coefficient of interest

mins2

minimum variance estimate

exclude

Vector of features to exclude when shrinking

See Also

fitZeroLogNormal fitFeatureModel


[Package metagenomeSeq version 1.26.1 Index]