calcNormFactors {metagenomeSeq}R Documentation

Cumulative sum scaling (css) normalization factors

Description

Return a vector of the the sum up to and including a quantile.

Usage

calcNormFactors(obj, p = cumNormStatFast(obj))

Arguments

obj

An MRexperiment object or matrix.

p

The pth quantile.

Value

Vector of the sum up to and including a sample's pth quantile.

See Also

fitZig cumNormStatFast cumNorm

Examples


data(mouseData)
head(calcNormFactors(mouseData))


[Package metagenomeSeq version 1.26.1 Index]