fitFeatureModelResults-class {metagenomeSeq}R Documentation

Class "fitFeatureModelResults" – a formal class for storing results from a fitFeatureModel call

Description

This class contains all of the same information expected from a fitFeatureModel call, but it is defined in the S4 style as opposed to being stored as a list.

Slots

call

the call made to fitFeatureModel

fitZeroLogNormal

list of parameter estimates for the zero-inflated log normal model

design

model matrix

taxa

taxa names

counts

count matrix

pvalues

calculated p-values

permuttedFits

permutted z-score estimates under the null


[Package metagenomeSeq version 1.26.0 Index]