geneCloud {maftools} | R Documentation |
Plots word cloud of mutated genes or altered cytobands with size proportional to the event frequency.
geneCloud(input, minMut = 3, col = NULL, top = NULL, genesToIgnore = NULL, ...)
input |
an |
minMut |
Minimum number of samples in which a gene is required to be mutated. |
col |
vector of colors to choose from. |
top |
Just plot these top n number of mutated genes. |
genesToIgnore |
Ignore these genes. |
... |
Other options passed to |
nothing.
laml.input <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools") laml <- read.maf(maf = laml.input, useAll = FALSE) geneCloud(input = laml, minMut = 5)