gheatmap {ggtree}R Documentation

gheatmap

Description

append a heatmap of a matrix to right side of phylogenetic tree

Usage

gheatmap(p, data, offset = 0, width = 1, low = "green",
  high = "red", color = "white", colnames = TRUE,
  colnames_position = "bottom", colnames_angle = 0,
  colnames_level = NULL, colnames_offset_x = 0,
  colnames_offset_y = 0, font.size = 4, hjust = 0.5)

Arguments

p

tree view

data

matrix or data.frame

offset

offset of heatmap to tree

width

total width of heatmap, compare to width of tree

low

color of lowest value

high

color of highest value

color

color of heatmap cell border

colnames

logical, add matrix colnames or not

colnames_position

one of 'bottom' or 'top'

colnames_angle

angle of column names

colnames_level

levels of colnames

colnames_offset_x

x offset for column names

colnames_offset_y

y offset for column names

font.size

font size of matrix colnames

hjust

hjust for column names (0: align left, 0.5: align center, 1: align righ)

Value

tree view

Author(s)

Guangchuang Yu


[Package ggtree version 1.16.3 Index]