makeSimSwishData {fishpond}R Documentation

Make simulated data for swish for examples/testing

Description

Makes a small swish dataset for examples and testing. The first six genes have some differential expression evidence in the counts, with varying degree of inferential variance across inferential replicates (1-2: minor, 3-4: some, 5-6: substantial). The 7th and 8th genes have all zeros to demonstrate labelKeep.

Usage

makeSimSwishData(m = 1000, n = 10, numReps = 20, null = FALSE)

Arguments

m

number of genes

n

number of samples

numReps

how many inferential replicates

null

logical, whether to make an all null dataset

Value

a SummarizedExperiment

Examples


library(SummarizedExperiment)
y <- makeSimSwishData()
assayNames(y)


[Package fishpond version 1.0.1 Index]