groupingScheme |
A character vector of length 1, determining the character
symbols used to represent amino acids grouped by their physical and chemical
properties. The available groupingScheme are "no","bulkiness_Zimmerman",
"hydrophobicity_KD", "hydrophobicity_HW", "isoelectric_point_Zimmerman",
"contact_potential_Maiorov", "chemistry_property_Mahler", "consensus_similarity_SF",
"volume_Bigelow", "structure_alignments_Mirny", "polarity_Grantham",
"sequence_alignment_Dayhoff", "bulkiness_Zimmerman_group", "hydrophobicity_KD_group",
"hydrophobicity_HW_group", "charge_group", "contact_potential_Maiorov_group",
"chemistry_property_Mahler_group", "consensus_similarity_SF_group",
"volume_Bigelow_group", "structure_alignments_Mirny_group", "polarity_Grantham_group",
"sequence_alignment_Dayhoff_group", and "custom". If "custom" is used, users
must define a grouping scheme using a list containing sublist named as "color",
"symbol" and "group" using the function addScheme . No grouping
was applied for the first 12 schemes.
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