proteome.example {dagLogo} | R Documentation |
Proteome-class
representing the subset of Drosophila melanogaster proteome.The subset Proteome-class
of fruit fly.
proteome.example
An object of Proteome-class
for fly subset proteome.
The format is: A list with one data frame and an character.
*‘proteome': ’data.frame': 1406 obs. of 4 variables *‘type': ’character': "UniProt" *‘species': ’character': "Drosophila melanogaster"
The format of proteome is
*'ENTREZ_GENE': a character vector, records entrez gene id *'SEQUENCE': a character vector, peptide sequences *'ID': a character vector, Uniprot ID *'LEN': a character vector, length of peptides
used in the examples
Annotation data obtained by:
library(UniProt.ws)
taxId(UniProt.ws) <- 7227
proteome <- prepareProteome(UniProt.ws)
proteome@proteome <- proteome@proteome[sample(1:19902, 1406), ]
data(proteome.example) head(proteome.example@proteome) proteome.example@type