top_rows_heatmap-ConsensusPartitionList-method {cola}R Documentation

Heatmap of top rows from different top-value methods

Description

Heatmap of top rows from different top-value methods

Usage

## S4 method for signature 'ConsensusPartitionList'
top_rows_heatmap(object, top_n = min(object@list[[1]]@top_n),
    anno = get_anno(object), anno_col = get_anno_col(object),
    scale_rows = object@list[[1]]@scale_rows, ...)

Arguments

object

a ConsensusPartitionList-class object.

top_n

number of top rows.

anno

a data frame of annotations for the original matrix columns. By default it uses the annotations specified in run_all_consensus_partition_methods.

anno_col

a list of colors (color is defined as a named vector) for the annotations. If anno is a data frame, anno_col should be a named list where names correspond to the column names in anno.

scale_rows

wether scale rows.

...

pass to top_rows_heatmap,matrix-method

Value

No value is returned.

Author(s)

Zuguang Gu <z.gu@dkfz.de>

See Also

top_rows_heatmap,matrix-method

Examples

# There is no example
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[Package cola version 1.0.0 Index]