guess_best_k-ConsensusPartitionList-method {cola}R Documentation

Guess the best number of partitions

Description

Guess the best number of partitions

Usage

## S4 method for signature 'ConsensusPartitionList'
guess_best_k(object, rand_index_cutoff = 0.95)

Arguments

object

a ConsensusPartitionList-class object.

rand_index_cutoff

the Rand index compared to previous k is larger than this, it is filtered out.

Details

It basically gives the best k for each combination of top-value method and partition method by calling guess_best_k,ConsensusPartition-method.

Value

A data frame with the best k and other statistics for each combination of methods.

Author(s)

Zuguang Gu <z.gu@dkfz.de>

Examples

data(cola_rl)
guess_best_k(cola_rl)

[Package cola version 1.0.0 Index]