cola_report-ConsensusPartitionList-method {cola} | R Documentation |
Make HTML report from the ConsensusPartitionList object
## S4 method for signature 'ConsensusPartitionList' cola_report(object, output_dir = getwd(), mc.cores = 1, env = parent.frame())
object |
a |
output_dir |
the output directory where the report is put. |
mc.cores |
multiple cores to use. |
env |
where the objects in the report are found, internally used. |
The ConsensusPartitionList-class
object contains results for all top-value methods and all partition methods.
This function generates a HTML report which contains all plots and tables for every combination
of top-value method and partition method.
The report generation may take a while because it generates A LOT of heatmaps.
Icon (https://www.flaticon.com/free-icon/can_1366373 ) of the HTML page is made by photo3idea_studio (https://www.flaticon.com/authors/photo3idea-studio ) from http://www.flaticon.com licensed by CC 3.0 BY.
No value is returned.
Zuguang Gu <z.gu@dkfz.de>
## Not run: data(cola_rl) cola_report(cola_rl[c("sd", "MAD"), c("hclust", "skmeans")], output_dir = "~/test_cola_cl_report") ## End(Not run)