cola_report-ConsensusPartitionList-method {cola}R Documentation

Make HTML report from the ConsensusPartitionList object

Description

Make HTML report from the ConsensusPartitionList object

Usage

## S4 method for signature 'ConsensusPartitionList'
cola_report(object, output_dir = getwd(), mc.cores = 1, env = parent.frame())

Arguments

object

a ConsensusPartitionList-class object.

output_dir

the output directory where the report is put.

mc.cores

multiple cores to use.

env

where the objects in the report are found, internally used.

Details

The ConsensusPartitionList-class object contains results for all top-value methods and all partition methods. This function generates a HTML report which contains all plots and tables for every combination of top-value method and partition method.

The report generation may take a while because it generates A LOT of heatmaps.

Icon (https://www.flaticon.com/free-icon/can_1366373 ) of the HTML page is made by photo3idea_studio (https://www.flaticon.com/authors/photo3idea-studio ) from http://www.flaticon.com licensed by CC 3.0 BY.

Value

No value is returned.

Author(s)

Zuguang Gu <z.gu@dkfz.de>

Examples

## Not run: 
data(cola_rl)
cola_report(cola_rl[c("sd", "MAD"), c("hclust", "skmeans")], output_dir = "~/test_cola_cl_report")

## End(Not run)

[Package cola version 1.0.0 Index]