plotFeatureScatter {clusterExperiment} | R Documentation |
Plot a scatter plot of the (transformed) values for a set of gene expression values, colored by cluster
## S4 method for signature 'ClusterExperiment,character' plotFeatureScatter(object, features, ...) ## S4 method for signature 'ClusterExperiment,numeric' plotFeatureScatter(object, features, whichCluster, plotUnassigned = TRUE, unassignedColor = "grey", missingColor = "white", whichAssay = 1, legendLocation = NA, jitterFactor = NA, ...)
object |
a ClusterExperiment object |
features |
the indices of the features (either numeric or character matching rownames of object) to be plotted. |
... |
arguments passed to |
whichCluster |
which clusters to show on the plot |
plotUnassigned |
whether to plot the unassigned samples as a cluster (either -1 or -2) |
unassignedColor |
If not NULL, should be character value giving the
color for unassigned (-2) samples (overrides |
missingColor |
If not NULL, should be character value giving the color
for missing (-2) samples (overrides |
whichAssay |
numeric or character specifying which assay to use. See
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legendLocation |
character value passed to |
jitterFactor |
numeric. If NA, no jittering is done. Otherwise, passed to
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