plotGridSearchPerplexity {celda}R Documentation

Visualize perplexity of a list of celda models

Description

Visualize perplexity of every model in a celdaList, by unique K/L combinations

Usage

plotGridSearchPerplexity(celdaList, sep = 1)

Arguments

celdaList

Object of class 'celdaList'.

sep

Numeric. Breaks in the x axis of the resulting plo.t.

Value

A ggplot plot object showing perplexity as a function of clustering parameters.

Examples

data(celdaCGSim, celdaCGGridSearchRes)
## Run various combinations of parameters with 'celdaGridSearch'
celdaCGGridSearchRes <- resamplePerplexity(
  celdaCGSim$counts,
  celdaCGGridSearchRes)
plotGridSearchPerplexity(celdaCGGridSearchRes)

[Package celda version 1.0.3 Index]