plotGridSearchPerplexitycelda_CG {celda}R Documentation

Plot perplexity as a function of K and L from celda_CG models

Description

This function plots perplexity as a function of the cell/gene (K/L) clusters as generated by celdaGridSearch().

Usage

plotGridSearchPerplexitycelda_CG(celdaList, sep)

Arguments

celdaList

Object of class 'celdaList'.

sep

Numeric. Breaks in the x axis of the resulting plot.

Value

A ggplot plot object showing perplexity as a function of clustering parameters.

Examples

data(celdaCGSim, celdaCGGridSearchRes)
celdaCGGridSearchRes <- resamplePerplexity(
  celdaCGSim$counts,
  celdaCGGridSearchRes
)
plotGridSearchPerplexity(celdaCGGridSearchRes)

[Package celda version 1.0.0 Index]