celdaHeatmap,celda_G-method {celda} | R Documentation |
Renders an expression heatmap to visualize 'celda_CG()' results. The top 'nfeatures' for each module will be included in the heatmap.
## S4 method for signature 'celda_G' celdaHeatmap(counts, celdaMod, nfeatures = 25, ...)
counts |
Integer matrix. Rows represent features and columns represent cells. This matrix should be the same as the one used to generate 'celdaMod'. |
celdaMod |
Celda object of class 'celda_G'. |
nfeatures |
Integer. Maximum number of features to select for each module. Default 25. |
... |
Additional parameters. |
list A list containing the dendrograms and the heatmap grob.
'celda_G()' for clustering features and 'celdaTsne()' for generating 2-dimensional coordinates.
data(celdaGSim, celdaGMod) celdaHeatmap(celdaGSim$counts, celdaGMod)