celdaHeatmap,celda_C-method {celda}R Documentation

Heatmap for celda_C

Description

Renders an expression heatmap to visualize 'celda_C()' results. Features to include in the heatmap must be supplied.

Usage

## S4 method for signature 'celda_C'
celdaHeatmap(counts, celdaMod, featureIx, ...)

Arguments

counts

Integer matrix. Rows represent features and columns represent cells. This matrix should be the same as the one used to generate 'celdaMod'.

celdaMod

Celda object of class 'celda_C'.

featureIx

Integer vector. Indices of features to plot, such the top features from a differential expression analysis.

...

Additional parameters.

Value

list A list containing dendrograms and the heatmap grob

See Also

'celda_C()' for clustering cells and 'celdaTsne()' for generating 2-dimensional coordinates

Examples

data(celdaCSim, celdaCMod)
celdaHeatmap(celdaCSim$counts, celdaCMod)

[Package celda version 1.0.0 Index]