clusterProbability {celda}R Documentation

Get cluster probability

Description

Get the probability of the cluster assignments generated during a celda run.

Usage

clusterProbability(counts, celdaMod, log = FALSE, ...)

Arguments

counts

Integer matrix. Rows represent features and columns represent cells. This matrix should be the same as the one used to generate 'celdaMod'.

celdaMod

celdaModel. Options available in 'celda::availableModels'.

log

Logical. If FALSE, then the normalized conditional probabilities will be returned. If TRUE, then the unnormalized log probabilities will be returned. Default FALSE.

...

Additional parameters.

Value

A numeric vector of the cluster assignment probabilties

Examples

data(celdaCGSim, celdaCGMod)
clusterProb <- clusterProbability(celdaCGSim$counts, celdaCGMod)

[Package celda version 1.0.0 Index]