artmsSpectralCounts {artMS} | R Documentation |
Outputs the spectral counts from the MaxQuant evidence file.
artmsSpectralCounts(evidence_file, keys_file, output_file = NULL, verbose = TRUE)
evidence_file |
(char) Maxquant evidence file or data object |
keys_file |
(char) Keys file with the experimental design or data object |
output_file |
(char) Output file name (add |
verbose |
(logical) |
A txt file with biological replicates, protein id, and spectral count columns
summary_spectral_counts <- artmsSpectralCounts( evidence_file = artms_data_ph_evidence, keys_file = artms_data_ph_keys)