diversity_beta_heatmap {animalcules}R Documentation

Beta diversity heatmap

Description

Beta diversity heatmap

Usage

diversity_beta_heatmap(MAE, tax_level, input_beta_method,
  input_bdhm_select_conditions, input_bdhm_sort_by = c("nosort",
  "conditions"))

Arguments

MAE

A multi-assay experiment object

tax_level

The taxon level used for organisms

input_beta_method

bray, jaccard

input_bdhm_select_conditions

Which condition to group samples

input_bdhm_sort_by

Sorting option e.g. "nosort", "conditions"

Value

A plotly object

Examples

data_dir = system.file("extdata/MAE.rds", package = "animalcules")
toy_data <- readRDS(data_dir)
p <- diversity_beta_heatmap(toy_data,
                            tax_level = "genus",
                            input_beta_method = "bray",
                            input_bdhm_select_conditions = "DISEASE",
                            input_bdhm_sort_by = "conditions")
p


[Package animalcules version 1.0.4 Index]