diversity_beta_boxplot {animalcules}R Documentation

Beta diversity boxplot

Description

Beta diversity boxplot

Usage

diversity_beta_boxplot(MAE, tax_level, input_beta_method,
  input_select_beta_condition)

Arguments

MAE

A multi-assay experiment object

tax_level

The taxon level used for organisms

input_beta_method

bray, jaccard

input_select_beta_condition

Which condition to group samples

Value

A plotly object

Examples

data_dir = system.file('extdata/MAE.rds', package = 'animalcules')
toy_data <- readRDS(data_dir)
p <- diversity_beta_boxplot(toy_data,
                            tax_level = 'genus',
                            input_beta_method = 'bray',
                            input_select_beta_condition = 'DISEASE')
p


[Package animalcules version 1.0.4 Index]