diversity_beta_heatmap {animalcules} | R Documentation |
Beta diversity heatmap
diversity_beta_heatmap(MAE, tax_level, input_beta_method, input_bdhm_select_conditions, input_bdhm_sort_by = c("nosort", "conditions"))
MAE |
A multi-assay experiment object |
tax_level |
The taxon level used for organisms |
input_beta_method |
bray, jaccard |
input_bdhm_select_conditions |
Which condition to group samples |
input_bdhm_sort_by |
Sorting option e.g. "nosort", "conditions" |
A plotly object
data_dir = system.file("extdata/MAE.rds", package = "animalcules") toy_data <- readRDS(data_dir) p <- diversity_beta_heatmap(toy_data, tax_level = "genus", input_beta_method = "bray", input_bdhm_select_conditions = "DISEASE", input_bdhm_sort_by = "conditions") p