read_pathoscope_data {animalcules} | R Documentation |
Reads the data from PathoScope reports and returns a list of final guess relative abundance and count data
read_pathoscope_data(input_dir = ".", pathoreport_file_suffix = "-sam-report.tsv", use.input.files = FALSE, input.files.path.vec = NULL, input.files.name.vec = NULL)
input_dir |
Directory where the tsv files from PathoScope are located |
pathoreport_file_suffix |
PathoScope report files suffix |
use.input.files |
whether input dir to pathoscope files or directly pathoscope files |
input.files.path.vec |
vector of pathoscope file paths |
input.files.name.vec |
vector of pathoscope file names |
List of final guess relative abundance and count data