goodBaseQuality {amplican} | R Documentation |
Filters out sequences which have bad base quality readings.
goodBaseQuality(reads, min = 20)
reads |
(ShortRead object) Loaded reads from fastq. |
min |
(numeric) This is the minimum quality that we accept for every nucleotide. For example, if we have a sequence with nucleotides which have quality 50-50-50-50-10, and we set the minimum to 30, the whole sequence will be a bad sequence. The minimum is set to 0 by default. |
(boolean) Logical vector with the valid rows as TRUE.