makeTFBSmatrix {TFEA.ChIP} | R Documentation |
Function to search for a list of entrez gene IDs in a TF-gene binding data base.
makeTFBSmatrix(GeneList, id_db, geneSetAsInput = TRUE)
GeneList |
Array of gene Entrez IDs |
id_db |
TF - gene binding database. |
geneSetAsInput |
TRUE for lists of GeneSet objects, FALSE for lists of vectors. |
1/0 matrix. Each row represents a gene, each column, a ChIP-Seq file.
data('tfbs.database','Entrez.gene.IDs',package = 'TFEA.ChIP') makeTFBSmatrix(Entrez.gene.IDs,tfbs.database)