getManifest {TCGAbiolinks}R Documentation

Get a Manifest from GDCquery output that can be used with GDC-client

Description

Get a Manifest from GDCquery output that can be used with GDC-client

Usage

getManifest(query, save = F)

Arguments

query

A query for GDCquery function

save

Write Manifest to a txt file (tab separated)

Examples

query <- GDCquery(project = "TARGET-AML",
                  data.category = "Transcriptome Profiling",
                  data.type = "Gene Expression Quantification",
                  workflow.type = "HTSeq - Counts",
                  barcode = c("TARGET-20-PADZCG-04A-01R","TARGET-20-PARJCR-09A-01R"))
getManifest(query)

[Package TCGAbiolinks version 2.12.5 Index]