gaiaCNVplot {TCGAbiolinks} | R Documentation |
This function is a auxiliary function to visualize GAIA ouptut (all significant aberrant regions.)
gaiaCNVplot(calls, threshold = 0.01)
calls |
A matrix with the following columns: Chromossome, Aberration Kind Region Start, Region End, Region Size and score |
threshold |
Score threshold (orange horizontal line in the plot) |
A plot with all significant aberrant regions.
call <- data.frame("Chromossome" = rep(9,100), "Aberration Kind" = rep(c(-2,-1,0,1,2),20), "Region Start [bp]" = 18259823:18259922, "Region End [bp]" = 18259823:18259922, "score" = rep(c(1,2,3,4),25)) gaiaCNVplot(call,threshold = 0.01) call <- data.frame("Chromossome" = rep(c(1,9),50), "Aberration Kind" = rep(c(-2,-1,0,1,2),20), "Region Start [bp]" = 18259823:18259922, "Region End [bp]" = 18259823:18259922, "score" = rep(c(1,2,3,4),25)) gaiaCNVplot(call,threshold = 0.01)