TCGAanalyze_networkInference {TCGAbiolinks}R Documentation

infer gene regulatory networks

Description

TCGAanalyze_networkInference taking expression data as input, this will return an adjacency matrix of interactions

Usage

TCGAanalyze_networkInference(data, optionMethod = "clr")

Arguments

data

expression data, genes in columns, samples in rows

optionMethod

inference method, chose from aracne, c3net, clr and mrnet

Value

an adjacent matrix


[Package TCGAbiolinks version 2.12.5 Index]