GDCquery_ATAC_seq {TCGAbiolinks}R Documentation

Retrieve open access ATAC-seq files from GDC server

Description

Retrieve open access ATAC-seq files from GDC server https://gdc.cancer.gov/about-data/publications/ATACseq-AWG Manifest available at: https://gdc.cancer.gov/files/public/file/ATACseq-AWG_Open_GDC-Manifest.txt

Usage

GDCquery_ATAC_seq(tumor = NULL, file.type = NULL)

Arguments

tumor

a valid tumor

file.type

Write maf file into a csv document

Value

A data frame with the maf file information

Examples

## Not run: 
   query <- GDCquery_ATAC_seq(file.type = "txt")
   GDCdownload(query)
   query <- GDCquery_ATAC_seq(file.type = "bigWigs")
   GDCdownload(query)

## End(Not run)

[Package TCGAbiolinks version 2.12.1 Index]