TCGA_MolecularSubtype {TCGAbiolinks}R Documentation

Retrieve molecular subtypes for given TCGA barcodes

Description

TCGA_MolecularSubtype Retrieve molecular subtypes from TCGA consortium for a given set of barcodes

Usage

TCGA_MolecularSubtype(barcodes)

Arguments

barcodes

is a vector of TCGA barcodes

Value

List with $subtypes attribute as a dataframe with barcodes, samples, subtypes, and colors. The $filtered attribute is returned as filtered samples with no subtype info

Examples

TCGA_MolecularSubtype("TCGA-60-2721-01A-01R-0851-07")

[Package TCGAbiolinks version 2.12.0 Index]