seqCheck {SeqArray}R Documentation

Data Integrity Checking

Description

Performs data integrity on a SeqArray GDS file.

Usage

seqCheck(gdsfile, verbose=TRUE)

Arguments

gdsfile

a SeqVarGDSClass object, or a file name

verbose

if TRUE, display information

Value

A list of the following components:

hash

a data.frame for hash checking, including algo for digest algorithms and ok for the checking states

dimension

a data.frame for checking the dimension of each variable, including ok for the checking states and info for the error messages

Author(s)

Xiuwen Zheng

Examples

# the GDS file
(gds.fn <- seqExampleFileName("gds"))

seqCheck(gds.fn)

[Package SeqArray version 1.24.1 Index]