download_dataset {RGMQL} | R Documentation |
It donwloads private dataset as zip file from remote repository to local path, or donwloads and saves it into R environment as GRangesList, using the proper GMQL web service available on a remote server
download_dataset(url, datasetName, path = getwd()) download_as_GRangesList(url, datasetName)
url |
string url of server: It must contain the server address and base url; service name is added automatically |
datasetName |
string name of dataset to download |
path |
string local path folder where to store dataset, by default it is R working directory |
If error occurs, a specific error is printed
None
GRangesList containing all GMQL samples in dataset
## Download dataset in R working directory ## In this case we try to download a dataset of the user ## (public datasets from remote repository cannot be downloaded) ## Not run: remote_url = "http://www.gmql.eu/gmql-rest/" login_gmql(remote_url) download_dataset(remote_url, "Example_Dataset_1", path = getwd()) ## Create GRangesList from user dataset Example_Dataset1 got ## from repository download_as_GRangesList(remote_url, "Example_Dataset_1") ## End(Not run)