getTxdbFeatures {RCAS}R Documentation

getTxdbFeatures

Description

This function takes as input a txdb object from GenomicFeatures library. Then extracts the coordinates of gene features such as promoters, introns, exons, 5'/3' UTRs, and whole transcripts.

Usage

getTxdbFeatures(txdb)

Arguments

txdb

A txdb object imported by GenomicFeatures::makeTxDb family of functions

Value

A list of GRanges objects

Examples

data(gff)
txdb <- GenomicFeatures::makeTxDbFromGRanges(gff)
txdbFeatures <- getTxdbFeatures(txdb)


[Package RCAS version 1.10.0 Index]