threshold_precision {PrInCE}R Documentation

Threshold interactions at a given precision cutoff

Description

Threshold interactions at a given precision cutoff

Usage

threshold_precision(interactions, threshold)

Arguments

interactions

the ranked list of interactions output by predict_interactions, including a precision column

threshold

the minimum precision of the unweighted interaction network to return

Value

the subset of the original ranked list at the given precision

Examples

data(scott)
data(scott_gaussians)
data(gold_standard)
# analyze only the first 100 profiles
subset <- scott[seq_len(500), ]
gauss <- scott_gaussians[names(scott_gaussians) %in% rownames(subset)]
ppi <- PrInCE(subset, gold_standard, gaussians = gauss, models = 1, 
             cv_folds = 3)
network <- threshold_precision(ppi, threshold = 0.5)
nrow(network)


[Package PrInCE version 1.0.0 Index]