organism_types {Onassis}R Documentation

organism_types

Description

This method retrierves the allowed organisms in GEOmetadb

Usage

organism_types(geo_con)

Arguments

geo_con

connection to the SQLite GEOmetadb databse

Value

A character vector with all the possible organism values

Examples

if(file.exists('GEOmetadb.sqlite')){
 geo_con <- connectToGEODB('GEOmetadb.sqlite')
 species <- organism_types(geo_con)
}else{
 print('You need to download GEOmetadb.sqlite to run this example')
}

[Package Onassis version 1.6.0 Index]