txSeqsFromFa {ORFik} | R Documentation |
A small safety wrapper around extractTranscriptSeqs
txSeqsFromFa(grl, faFile, is.sorted = FALSE)
grl |
a GRangesList object |
faFile |
FaFile, BSgenome or fasta/index file path used to find the transcripts |
is.sorted |
a speedup, if you know the ranges are sorted |
a DNAStringSet of the transcript sequences
Other ExtendGenomicRanges: asTX
,
coveragePerTiling
,
overlapsToCoverage
,
reduceKeepAttr
, tile1
,
windowPerGroup