subsetCoverage {ORFik} | R Documentation |
GRanges object should be beforehand tiled to size of 1. This subsetting takes account for strand.
subsetCoverage(cov, y)
cov |
A coverage object from coverage() |
y |
GRanges object for which coverage should be extracted |
numeric vector of coverage of input GRanges object
Other features: computeFeaturesCage
,
computeFeatures
,
disengagementScore
,
distToCds
, distToTSS
,
entropy
, floss
,
fpkm_calc
, fpkm
,
fractionLength
,
initiationScore
,
insideOutsideORF
, isInFrame
,
isOverlapping
,
kozakSequenceScore
, orfScore
,
rankOrder
,
ribosomeReleaseScore
,
ribosomeStallingScore
,
startRegionCoverage
,
startRegion
, translationalEff