addNewTSSOnLeaders {ORFik}R Documentation

add cage max peaks as new transcript start sites for each 5' leader (*) strands are not supported, since direction must be known.

Description

add cage max peaks as new transcript start sites for each 5' leader (*) strands are not supported, since direction must be known.

Usage

addNewTSSOnLeaders(fiveUTRs, maxPeakPosition, removeUnused)

Arguments

fiveUTRs

The 5' leader sequences as GRangesList

maxPeakPosition

The max peak for each 5' leader found by cage

removeUnused

logical (FALSE), remove leaders that did not have any cage support. (standard is to set them to original annotation)

Value

a GRanges object of first exons


[Package ORFik version 1.4.0 Index]