findNewTSS {ORFik} | R Documentation |
Finds max peaks per trancsript from reads in the cagefile
findNewTSS(fiveUTRs, cageData, extension, restrictUpstreamToTx)
fiveUTRs |
The 5' leader sequences as GRangesList |
cageData |
The CAGE as GRanges object |
extension |
The number of basses upstream to add on transcripts |
restrictUpstreamToTx |
a logical (FALSE), if you want to restrict leaders to not extend closer than 5 bases from closest upstream leader, set this to TRUE. |
a Hits object