filterCage {ORFik}R Documentation

Filter peak of cage-data by value

Description

Filter peak of cage-data by value

Usage

filterCage(cage, filterValue = 1, fiveUTRs = NULL)

Arguments

cage

The raw cage-data, as GRanges. Must contain a score column, with the count hits per position.

filterValue

The integer of counts(score) to filter on for a tss to pass as hit

fiveUTRs

a GRangesList (NULL), if added will filter out cage reads by these following rules: all reads in region (-5:-1, 1:5) for each tss will be removed, removes noise.

Value

the filtered Granges object


[Package ORFik version 1.4.0 Index]