subsetCoverage {ORFik}R Documentation

Subset GRanges to get coverage.

Description

GRanges object should be beforehand tiled to size of 1. This subsetting takes account for strand.

Usage

subsetCoverage(cov, y)

Arguments

cov

A coverage object from coverage()

y

GRanges object for which coverage should be extracted

Value

numeric vector of coverage of input GRanges object

See Also

Other features: computeFeaturesCage, computeFeatures, disengagementScore, distToCds, distToTSS, entropy, floss, fpkm_calc, fpkm, fractionLength, initiationScore, insideOutsideORF, isInFrame, isOverlapping, kozakSequenceScore, orfScore, rankOrder, ribosomeReleaseScore, ribosomeStallingScore, startRegionCoverage, startRegion, translationalEff


[Package ORFik version 1.4.0 Index]