downstreamFromPerGroup {ORFik}R Documentation

Get rest of objects downstream (inclusive)

Description

Per group get the part downstream of position. downstreamFromPerGroup(tx, startSites(threeUTRs, asGR = TRUE)) will return the 3' utrs per transcript as GRangesList, usually used for interesting parts of the transcripts.

Usage

downstreamFromPerGroup(tx, downstreamFrom)

Arguments

tx

a GRangesList, usually of Transcripts to be changed

downstreamFrom

a vector of integers, for each group in tx, where is the new start point of first valid exon.

Details

If you don't want to include the points given in the region, use downstreamOfPerGroup

Value

a GRangesList of downstream part

See Also

Other GRanges: assignFirstExonsStartSite, assignLastExonsStopSite, downstreamOfPerGroup, upstreamFromPerGroup, upstreamOfPerGroup


[Package ORFik version 1.4.0 Index]