assignFirstExonsStartSite {ORFik}R Documentation

Reassign the start positions of the first exons per group in grl

Description

make sure your grl is sorted, since start of "-" strand objects should be the max end in group, use ORFik:::sortPerGroup(grl) to get sorted grl.

Usage

assignFirstExonsStartSite(grl, newStarts)

Arguments

grl

a GRangesList object

newStarts

an integer vector of same length as grl, with new start values

Value

the same GRangesList with new start sites

See Also

Other GRanges: assignLastExonsStopSite, downstreamFromPerGroup, downstreamOfPerGroup, upstreamFromPerGroup, upstreamOfPerGroup


[Package ORFik version 1.4.0 Index]