windowPerTranscript {ORFik} | R Documentation |
Get coverage window per transcript
windowPerTranscript(txdb, reads, splitIn3 = TRUE, windowSize = 100, fraction = "1")
txdb |
a TxDb object or a path to gtf/gff/db file. |
reads |
GRanges or GAlignment of reads |
splitIn3 |
a logical(TRUE), split window in 3 (leader, cds, trailer) |
windowSize |
an integer (100), size of windows |
fraction |
info on reads (which read length, or which type (RNA seq)) |
a data.table with columns position, score