fpkm_calc {ORFik} | R Documentation |
A helper for [fpkm()] Normally use function [fpkm()], if you want unusual normalization , you can use this. Short for: Fragments per kilobase of transcript per million fragments Normally used in Translations efficiency calculations
fpkm_calc(counts, lengthSize, librarySize)
counts |
a list, # of read hits per group |
lengthSize |
a list of lengths per group |
librarySize |
a numeric of size 1, the # of reads in library |
a numeric vector
doi: 10.1038/nbt.1621
Other features: computeFeaturesCage
,
computeFeatures
,
disengagementScore
,
distToCds
, distToTSS
,
entropy
, floss
,
fpkm
, fractionLength
,
initiationScore
,
insideOutsideORF
, isInFrame
,
isOverlapping
,
kozakSequenceScore
, orfScore
,
rankOrder
,
ribosomeReleaseScore
,
ribosomeStallingScore
,
startRegionCoverage
,
startRegion
, subsetCoverage
,
translationalEff