isOverlapping {ORFik} | R Documentation |
Input of this function, is the output of the function [distToCds()]
isOverlapping(dists)
dists |
a vector of distances between ORF and cds |
a logical vector
doi: 10.1074/jbc.R116.733899
Other features: computeFeaturesCage
,
computeFeatures
,
disengagementScore
,
distToCds
, distToTSS
,
entropy
, floss
,
fpkm_calc
, fpkm
,
fractionLength
,
initiationScore
,
insideOutsideORF
, isInFrame
,
kozakSequenceScore
, orfScore
,
rankOrder
,
ribosomeReleaseScore
,
ribosomeStallingScore
,
startRegionCoverage
,
startRegion
, subsetCoverage
,
translationalEff
# simple example isOverlapping(c(-3,-6,8,11,15)) # GRangesList example grl <- GRangesList(tx1_1 = GRanges("1", IRanges(1,10), "+")) fiveUTRs <- GRangesList(tx1 = GRanges("1", IRanges(1,20), "+")) dist <- distToCds(grl, fiveUTRs) isOverlapping <- isOverlapping(dist)