restrictTSSByUpstreamLeader {ORFik}R Documentation

Restrict extension of 5' UTRs to closest upstream leader end

Description

Basicly this function restricts all startSites, to the upstream GRangesList objects end. Usually leaders, for CAGE.

Usage

restrictTSSByUpstreamLeader(fiveUTRs, shiftedfiveUTRs)

Arguments

fiveUTRs

The 5' leader sequences as GRangesList

shiftedfiveUTRs

The 5' leader sequences as GRangesList shifted by CAGE

Value

GRangesList object of restricted fiveUTRs


[Package ORFik version 1.4.0 Index]