upstreamOfPerGroup {ORFik} | R Documentation |
Per group get the part upstream of position upstreamOfPerGroup(tx, startSites(cds, asGR = TRUE)) will return the 5' utrs per transcript, usually used for interesting parts of the transcripts.
upstreamOfPerGroup(tx, upstreamOf, allowOutside = TRUE)
tx |
a |
upstreamOf |
a vector of integers, for each group in tx, where is the the base after the new stop point of last valid exon. |
allowOutside |
a logical (T), can upstreamOf extend outside range of tx, can set boundary as a false hit, so beware. |
a GRangesList of upstream part
Other GRanges: assignFirstExonsStartSite
,
assignLastExonsStopSite
,
downstreamFromPerGroup
,
downstreamOfPerGroup
,
upstreamFromPerGroup