filterCage {ORFik} | R Documentation |
Filter peak of cage-data by value
filterCage(cage, filterValue = 1, fiveUTRs = NULL)
cage |
The raw cage-data, as GRanges. Must contain a score column, with the count hits per position. |
filterValue |
The integer of counts(score) to filter on for a tss to pass as hit |
fiveUTRs |
a GRangesList (NULL), if added will filter out cage reads by these following rules: all reads in region (-5:-1, 1:5) for each tss will be removed, removes noise. |
the filtered Granges object