upstreamFromPerGroup {ORFik} | R Documentation |
Per group get the part upstream of position. upstreamFromPerGroup(tx, stopSites(fiveUTRs, asGR = TRUE)) will return the 5' utrs per transcript as GRangesList, usually used for interesting parts of the transcripts.
upstreamFromPerGroup(tx, upstreamFrom)
tx |
a |
upstreamFrom |
a vector of integers, for each group in tx, where is the new start point of first valid exon. |
If you don't want to include the points given in the region,
use upstreamOfPerGroup
a GRangesList of upstream part
Other GRanges: assignFirstExonsStartSite
,
assignLastExonsStopSite
,
downstreamFromPerGroup
,
downstreamOfPerGroup
,
upstreamOfPerGroup