stopSites {ORFik} | R Documentation |
In ATGTTTTGC, get the position of the C.
stopSites(grl, asGR = FALSE, keep.names = FALSE, is.sorted = FALSE)
grl |
a |
asGR |
a boolean, return as GRanges object |
keep.names |
a logical (FALSE), keep names of input. |
is.sorted |
a speedup, if you know the ranges are sorted |
if asGR is False, a vector, if True a GRanges object
Other ORFHelpers: defineTrailer
,
longestORFs
, mapToGRanges
,
orfID
, startCodons
,
startSites
, stopCodons
,
txNames
, uniqueGroups
,
uniqueOrder
gr_plus <- GRanges(seqnames = c("chr1", "chr1"), ranges = IRanges(c(7, 14), width = 3), strand = c("+", "+")) gr_minus <- GRanges(seqnames = c("chr2", "chr2"), ranges = IRanges(c(4, 1), c(9, 3)), strand = c("-", "-")) grl <- GRangesList(tx1 = gr_plus, tx2 = gr_minus) stopSites(grl, is.sorted = FALSE)