makeORFNames {ORFik} | R Documentation |
grl must be grouped by transcript If a list of orfs are grouped by transcripts, but does not have ORF names, then create them and return the new GRangesList
makeORFNames(grl, groupByTx = TRUE)
grl |
|
groupByTx |
logical (T), should output GRangesList be grouped by transcripts (T) or by ORFs (F)? |
(GRangesList) with ORF names, grouped by transcripts, sorted.
gr_plus <- GRanges(seqnames = c("chr1", "chr1"), ranges = IRanges(c(7, 14), width = 3), strand = c("+", "+")) gr_minus <- GRanges(seqnames = c("chr2", "chr2"), ranges = IRanges(c(4, 1), c(9, 3)), strand = c("-", "-")) grl <- GRangesList(tx1 = gr_plus, tx2 = gr_minus) makeORFNames(grl)