orfID {ORFik}R Documentation

Get id's for each orf

Description

These id's can be uniqued by isoform etc, this is not supported by GenomicRanges.

Usage

orfID(grl, with.tx = FALSE)

Arguments

grl

a GRangesList

with.tx

a boolean, include transcript names, if you want unique orfs, so that they dont have multiple versions on different isoforms, set it to FALSE.

Value

a character vector of ids, 1 per orf

See Also

Other ORFHelpers: defineTrailer, longestORFs, mapToGRanges, startCodons, startSites, stopCodons, stopSites, txNames, uniqueGroups, uniqueOrder


[Package ORFik version 1.4.0 Index]