fread.bed {ORFik}R Documentation

Load bed file as GRanges.

Description

Wraps around rtracklayer::import.bed and tries to speed up loading with the use of data.table. Supports gzip, gz, bgz and bed formats.

Usage

fread.bed(filePath)

Arguments

filePath

The location of the bed file

Value

a GRanges object

See Also

Other utils: bedToGR, convertToOneBasedRanges, findFa, is.gr_or_grl, is.grl, validGRL

Examples

# path to example CageSeq data from hg19 heart sample
cageData <- system.file("extdata", "cage-seq-heart.bed.bgz",
                        package = "ORFik")
fread.bed(cageData)


[Package ORFik version 1.4.0 Index]