mapToGRanges {ORFik} | R Documentation |
Creates GRangesList from the results of ORFs_as_List and the GRangesList used to find the ORFs
mapToGRanges(grl, result, groupByTx = TRUE)
grl |
A |
result |
IRangesList A list of the results of finding uorfs list syntax is: Per list group in IRangesList is per grl index. In transcript coordinates. The names are grl index as character. |
groupByTx |
logical (T), should output GRangesList be grouped by transcripts (T) or by ORFs (F)? |
There is no check on invalid matches, so be carefull if you use this function directly.
A GRangesList
of ORFs.
Other ORFHelpers: defineTrailer
,
longestORFs
, orfID
,
startCodons
, startSites
,
stopCodons
, stopSites
,
txNames
, uniqueGroups
,
uniqueOrder