NBAMSeq {NBAMSeq} | R Documentation |
This function performs differential expression analysis based on negative binomial additive model.
NBAMSeq(object, gamma = 2, parallel = FALSE, BPPARAM = bpparam(), ...)
object |
a NBAMSeqDataSet object |
gamma |
a number greater or equal to 1. Increase gamma to create
smoother models. Default gamma is 2. See |
parallel |
either TRUE or FALSE indicating whether parallel should be used. Default is FALSE |
BPPARAM |
|
... |
additional arguments provided to |
a NBAMSeqDataSet object
Love, M.I., Huber, W., Anders, S. (2014) Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology, 15:550. https://doi.org/10.1186/s13059-014-0550-8
gsd = makeExample(n = 3, m = 10) gsd = NBAMSeq(gsd)