ModStringSet-io {Modstrings}R Documentation

Read/write an ModStringSet object from/to a file

Description

Functions to read/write an ModStringSet object from/to a file.

Usage

readModDNAStringSet(filepath, format = "fasta", nrec = -1L,
  skip = 0L, seek.first.rec = FALSE, use.names = TRUE,
  with.qualities = FALSE)

readModRNAStringSet(filepath, format = "fasta", nrec = -1L,
  skip = 0L, seek.first.rec = FALSE, use.names = TRUE,
  with.qualities = FALSE)

writeModStringSet(x, filepath, append = FALSE, compress = FALSE,
  compression_level = NA, format = "fasta", ...)

Arguments

filepath, format, nrec, skip, seek.first.rec, use.names, with.qualities, append, compress, compression_level, ...

See XStringSet-io for more details.

x

A ModStringSet object.

Value

A ModStringSet of the defined type.

Examples

seqs <- paste0(paste(alphabet(ModDNAString()), collapse = ""),
               c("A","G","T"))
set <- ModDNAStringSet(seqs)
file <- tempfile()
writeModStringSet(set, file)
read <- readModDNAStringSet(file)

[Package Modstrings version 1.0.0 Index]