input.pd {MSstatsTMT} | R Documentation |
It is made from raw.pd
and annotation.pd
,
which is the output of PDtoMSstatsTMTFormat function.
It should include the required columns as below.
The variables are as follows:
input.pd
A data frame with 20110 rows and 10 variables.
ProteinName : Protein ID
PeptideSequence : peptide sequence
Charge : peptide charge
PSM : peptide ion and spectra match
Channel : Labeling information (126, ... 131)
Condition : Condition (ex. Healthy, Cancer, Time0)
BioReplicate : Unique ID for biological subject.
Run : MS run ID
Mixture : Unique ID for TMT mixture.
Intensity: Protein Abundance
head(input.pd)