IGSAinput-getterSetters {MIGSA} | R Documentation |
Getters and setters functions to access IGSAinput object slots.
"IGSAinput-getterSetters"(object) name(object) ## S4 method for signature 'IGSAinput' name(object) name(object) <- value ## S4 replacement method for signature 'IGSAinput' name(object) <- value fitOptions(object) ## S4 method for signature 'IGSAinput' fitOptions(object) fitOptions(object) <- value ## S4 replacement method for signature 'IGSAinput' fitOptions(object) <- value exprData(object) ## S4 method for signature 'IGSAinput' exprData(object) exprData(object) <- value ## S4 replacement method for signature 'IGSAinput' exprData(object) <- value geneSetsList(object) ## S4 method for signature 'IGSAinput' geneSetsList(object) geneSetsList(object) <- value ## S4 replacement method for signature 'IGSAinput' geneSetsList(object) <- value gseaParams(object) ## S4 method for signature 'IGSAinput' gseaParams(object) gseaParams(object) <- value ## S4 replacement method for signature 'IGSAinput' gseaParams(object) <- value seaParams(object) ## S4 method for signature 'IGSAinput' seaParams(object) seaParams(object) <- value ## S4 replacement method for signature 'IGSAinput' seaParams(object) <- value
object |
IGSAinput object. |
value |
value to replace in the slot. |
Modified IGSAinput object or desired slot.
## Lets create a basic IGSAinput object. ## First create a expression matrix. maData <- matrix(rnorm(10000),ncol=4); rownames(maData) <- 1:nrow(maData); # It must have rownames (gene names). maExprData <- new("MAList",list(M=maData)); ## Now lets create the FitOptions object. myFOpts <- FitOptions(c("Cond1", "Cond1", "Cond2", "Cond2")); ## And now we can create our IGSAinput ready for MIGSA. igsaInput <- IGSAinput(name="igsaInput", expr_data=maExprData, fit_options=myFOpts); ## Lets get igsaInput values, and modify its name. name(igsaInput); name(igsaInput) <- "newName"; fitOptions(igsaInput); exprData(igsaInput); geneSetsList(igsaInput); gseaParams(igsaInput); seaParams(igsaInput);