MGFR-package {MGFR}R Documentation

Marker Gene Finder in RNA-seq data

Description

The package is designed to detect marker genes from RNA-seq data

Details

Package: MGFR
Type: Package
Version: 1.9.2
License: GPL-3

Author(s)

Khadija El Amrani Maintainer: Khadija El Amrani <khadija.el-amrani@charite.de>

Examples

data(ref.mat)
res.list <- getMarkerGenes.rnaseq(ref.mat, class.vec=colnames(ref.mat), samples2compare="all", annotate=TRUE, gene.ids.type="ensembl", score.cutoff=1)
names(res.list)
## show the first 20 markers of liver
res.list[["liver_markers"]][1:20]

[Package MGFR version 1.10.0 Index]