polishCPs {InPAS} | R Documentation |
remove the multiple positions of CP sites for same 3UTRs and only keep the best CP sites for proximal and distal.
polishCPs(CPs)
CPs |
output of searchProximalCPs or proximalAdj |
a matrix with columes: "fit_value", "Predicted_Proximal_APA", "Predicted_Distal_APA", "utr3start", "utr3end", "type"
Jianhong Ou
CPsite_estimation
, searchProximalCPs
,
proximalAdj
,
proximalAdjByPWM
, proximalAdjByCleanUpdTSeq
,
PAscore
,PAscore2