searchDistalCPs {InPAS}R Documentation

search distal CP sites

Description

search distal CP sites

Usage

searchDistalCPs(chr.cov.merge, conn_next_utr3, 
            curr_UTR, window_size, 
            depth.weight, 
            long_coverage_threshold, 
            background, z2s)

Arguments

chr.cov.merge

coverage of current chromosome

conn_next_utr3

joint to next 3UTR or not (used for removeUTR3__UTR3)

curr_UTR

GRanges of current 3UTR

window_size

window size

depth.weight

output of depthWeight

long_coverage_threshold

cutoff value for coverage of long form 3UTR

background

local background range

z2s

cut off background scores. see zScoreThrethold

Value

a list

Author(s)

Jianhong Ou

See Also

distalAdj, PAscore2


[Package InPAS version 1.16.1 Index]