covThreshold {InPAS} | R Documentation |
calculate the cutoff threshold of coverage for long form and short form
covThreshold(coverage, genome, txdb, utr3, chr="chr1", hugeData, groupList)
coverage |
coverage for each sample, output of coverageFromBedGraph |
genome |
an object of BSgenome |
txdb |
an object of TxDb |
utr3 |
output of utr3Annotation |
chr |
chromosome to be used for calculation, default is "chr1" |
hugeData |
is this dataset consume too much memory? if it is TRUE, the coverage will be saved into tempfiles. |
groupList |
group list of tag names |
a numeric vector
Jianhong Ou