PAscore2 {InPAS} | R Documentation |
calculate CP score by cleanUpdTSeq
PAscore2(seqname, pos, str, idx, idx.gp, genome, classifier, classifier_cutoff)
seqname |
sequence names |
pos |
genomic positions |
str |
strands |
idx |
offset postion |
idx.gp |
group number of the offset postion |
genome |
an object of BSgenome |
classifier |
a cleanUpdTSeq classifier |
classifier_cutoff |
classifier cutoff value |
a data.frame
Jianhong Ou