networkFromGenes {GeneNetworkBuilder}R Documentation

Build network by a list of given genes

Description

By providing a list of given genes, build a network for input of filterNetwork.

Usage

networkFromGenes(genes, interactionmap, level = 3)

Arguments

genes

A vector of character for interested genes.

interactionmap

Transcription regulatory map. Column names of interactionmap must be 'from','to'

level

Depth of node path

Value

a list with elements: rootgene: The nodes with maximal connetions. sifNetwork: Transcription regulatory network table.

Examples

data("ce.interactionmap")
data("example.data")
genes <- as.character(example.data$ce.bind$from)
xx<-networkFromGenes(example.data$ce.bind, ce.interactionmap, level=2)

[Package GeneNetworkBuilder version 1.26.0 Index]