lolliplot_buildMain {GenVisR} | R Documentation |
Construct Lolliplot given gene and mutation data
lolliplot_buildMain(gene_data, length, mutation_observed, mutation_observed2, fill_value, label_column, plot_text_angle, plot_text_size, point_size, gene_colour, sequence_data, plot_sidechain = FALSE, layers = NULL, paletteA = NULL, paletteB = NULL)
gene_data |
object of class dataframe giving protien domain and gene information |
length |
integer specifying the length of the protien in amino acids |
mutation_observed |
object of class data frame specifying mutations observed in input file |
mutation_observed2 |
optional object of class data frame specifying additional mutations for bottom track |
fill_value |
character string specifying the column on which to colour mutation points |
label_column |
character string specifying the column containing the labels to attach to mutation points |
plot_text_angle |
numeric value specifying the angle of text to be plotted |
plot_text_size |
numeric value specifying the size of text to be plotted |
point_size |
numeric value specigying the size of mutation points |
gene_colour |
color to shade plotted gene |
sequence_data |
object of class dataframe giving AA sequence, sidechain, and coord required if plot_sidechain is true |
plot_sidechain |
boolean specifying whether to plot the AA sidechain instead of domain information |
layers |
additional ggplot2 layers to plot |
paletteA |
Character vector specifying colours for gene features |
paletteB |
Character vector specifying colours for lolli features |
a ggplot2 object