gdcRNAMerge {GDCRNATools} | R Documentation |
Merge raw counts data that is downloaded from GDC to a single expression matrix
gdcRNAMerge(metadata, path, data.type, organized = FALSE)
metadata |
metadata parsed from |
path |
path to downloaded files for merging |
data.type |
one of |
organized |
logical, whether the raw counts data have already
been organized into a single folder (eg., data downloaded by the
'GenomicDataCommons' method are already organized).
Default is |
A dataframe or numeric matrix of raw counts data with rows are genes or miRNAs and columns are samples
Ruidong Li and Han Qu
####### Merge RNA expression data ####### metaMatrix <- gdcParseMetadata(project.id='TARGET-RT', data.type='RNAseq') ## Not run: rnaExpr <- gdcRNAMerge(metadata=metaMatrix, path='RNAseq/', data.type='RNAseq') ## End(Not run)