wrapperCalibrationPlot {DAPAR}R Documentation

Performs a calibration plot on an MSnSet object, calling the cp4p package functions.

Description

This function is a wrapper to the calibration.plot method of the cp4p package for use with MSnSet objects.

Usage

wrapperCalibrationPlot(vPVal, pi0Method = "pounds")

Arguments

vPVal

A dataframe that contains quantitative data.

pi0Method

A vector of the conditions (one condition per sample).

Value

A plot

Author(s)

Samuel Wieczorek

Examples

require(DAPARdata)
data(Exp1_R25_pept)
obj <- Exp1_R25_pept[1:1000]
keepThat <- mvFilterGetIndices(obj, 'wholeMatrix', ncol(obj))
obj <- mvFilterFromIndices(obj, keepThat)
qData <- Biobase::exprs(obj)
sTab <- Biobase::pData(obj)
limma <- limmaCompleteTest(qData,sTab)
wrapperCalibrationPlot(limma$P_Value[,1])

[Package DAPAR version 1.16.8 Index]